A consolidated atlas of polyadenylation sites from 3' end sequencing.
TECtool (Terminal Exon Characterization tool) is a machine learning-based annotation software (implemented in Python) that makes use of RNA sequencing (RNA-seq) data to identify novel terminal exons, infer novel transcript isoforms and annotate potential coding sequences.
The KAPAC tool enables the identification of sequence motifs that can explain changes in cellular 3' end processing from high-throughput sequencing data.
PAQR, standing for polyadenylation site usage quantification from RNA sequencing data, allows to quantify 3' end usage from standard RNA sequencing libraries.
A comprehensive repository for 3' end processing sites based on a uniform analysis of a large number of 3' end sequencing data sets.
The Integrated System for Motif Actitivity Response Analysis (ISMARA) is an online tool that models genome-wide expression or ChIP-seq data, in terms of computationally predicted regulatory sites for epigenetic regulators, transcription factors (TFs) and microRNAs (miRNAs).